Genomic Science 2010 Awardee Workshop VIII and Knowledgebase Workshop

Titles ...................................................................................................................................................................................................... xv Workshop Abstracts ........................................................................................................................................................................................... 1 Systems Biology for DOE Energy Missions: Bioenergy ................................................................................................................ 3 Bioenergy Research Centers ................................................................................................................................................................... 3 Great Lakes Bioenergy Research Center (GLBRC) ........................................................................................................................... 3 Joint BioEnergy Institute (JBEI) ...............................................................................................................................................................21 BioEnergy Science Center (BESC) ...........................................................................................................................................................34 Biofuels: Analytical and Imaging Technologies for Studying Lignocellulosic Material Degradation ............50 Systems Biology and Metabolic Engineering Approaches for Biological Hydrogen Production ....................60 Computing for Bioenergy ...........................................................................................................................................................................93 Small Business Innovation Research (SBIR) ......................................................................................................................................96 Systems Biology for DOE Environmental Missions: Systems Environmental Microbiology .............................99 Systems Biology Strategies and Technologies for Understanding Microbes, Plants, and Communities ........................................................................................................................................................................................... 129 Analytical Strategies for the Study of Plants, Microbes, and Microbial Communities ......................................... 129 Biological Systems Interactions ........................................................................................................................................................... 140 Plant-Microbe Interfaces ........................................................................................................................................................................ 146 The Predictive Microbial Biology Consortium ................................................................................................................................155 Molecular Interactions, Protein Complexes, and Structural Biology .............................................................................. 167 Validation of Genome Sequence Annotation ...............................................................................................................................170 Computing for Systems Biology ...........................................................................................................................................................178 Communication and Ethical, Legal, and Societal Issues ...................................................................................................... 189 Appendix 1: Participants ........................................................................................................................................................................... 197 Appendix 2: Websites ................................................................................................................................................................................... 205 Genomic Science Program Websites ............................................................................................................................................. 205 Bioenergy Research Center Websites ............................................................................................................................................ 205 Project and Related Websites ............................................................................................................................................................ 205 Author Index ...................................................................................................................................................................................................... 207 Institutional Index ........................................................................................................................................................................................ 217